Macdaddy, I think you need to check the vent seals as circled in the photo below, they are very prone to perish

See how this one is knackered. It let loads of water in, and made my back seat bases very wet as per your findings. Also the spare wheel well was flooded 

This is what you'll see from inside the car

So this is what I did to resolve it, lots of silicon. After I took this photo I went over it with another fat layer of silicon 

and, touch wood, my car hasn't leaked since...
I will probably post this as a 'watch out' as not many people are aware of the potential leakage from this part of the car.
Hope it helps you sir